importer Package

import_array_swc Module

class NewSWCLoader[source]

Bases: object

classmethod load_swc_set(src)[source]

Naive implementation, that doesn’t take account of interleaving of nodes

classmethod load_swc_single(src, name=None)[source]

_load_swc_single_tree(*args, **kwargs)[source]

import_tree_dictionary Module

class DictionaryLoader[source]

Bases: object

classmethod load(morph_dict, name=None, metadata=None)[source]

Load a morphology from a recursive dictionary such as: {‘root’: {‘length’: 20, ‘diam’: 20, ‘sections’:

[

{‘absangle’: 120, ‘length’: 40, ‘diam’: 5, ‘region’: ‘dendrite’}, {‘absangle’: 240, ‘length’: 40, ‘diam’: 5, ‘sections’:

[

{‘region’: ‘dendrite’, ‘diam’: 5, ‘relangle’: 240, ‘length’: 40}

], ‘region’: ‘dendrite’},

{‘absangle’: 5, ‘length’: 500, ‘diam’: 0.29999999999999999, ‘region’: ‘axon’}],

‘region’: ‘soma’}}

morphologyimporter Module

class MorphologyImporter[source]

Bases: object

method_name_prefix = 'from'

classmethod register(method_name, import_functor, as_type, allow_override=False)[source]