Source code for morphforge.traces.methods.trace_methods_std_splicing

#!/usr/bin/python
# -*- coding: utf-8 -*-

# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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import numpy
import numpy as np

from morphforge.units import Quantity
from morphforge.traces import TraceFixedDT
from morphforge.traces import TraceVariableDT
from morphforge.traces import TracePointBased

from morphforge.traces.traceobjpluginctrl import TraceMethodCtrl
from morphforge.traces.traceobjpluginctrl import copy_trace_attrs


# Shifting:
#############

[docs]def _shift_pt_trace(trace, offset): tr_type = type(trace) tr_new = tr_type( time=trace.time_pts + offset, data=trace.data_pts,) copy_trace_attrs(trace, tr_new, comment='+(Shifted %2.2f)' % offset) return tr_new
TraceMethodCtrl.register(TraceFixedDT, 'shift', _shift_pt_trace) TraceMethodCtrl.register(TraceVariableDT, 'shift', _shift_pt_trace) # Windowing: ###############
[docs]def _window_fixed_trace(trace, time_window): # Dirty Pre-processing if isinstance(time_window, Quantity): assert len(time_window) == 2 time_window = (time_window[0], time_window[1]) # print time_window, type(time_window) assert isinstance(time_window, tuple) assert len(time_window) == 2 if time_window[0] is None: time_window = (trace.get_min_time(), time_window[1]) if time_window[1] is None: time_window = (time_window[0], trace.get_min_time()) _t0 = time_window[0].rescale('ms').magnitude _t1 = time_window[1].rescale('ms').magnitude if not isinstance(trace, TracePointBased): raise ValueError() t_diff1 = time_window[0] - trace.get_min_time() if t_diff1 < 0: print 'time_window[0]', time_window[0].rescale('s') print 'trace.time[0]', trace.get_min_time().rescale('s') print raise ValueError("Windowing outside of trace (min) WindowMin/TraceMin: %f %f " % (time_window[0], trace.get_min_time())) if time_window[1] - trace.get_max_time() > 0: print 'time_window[1]', time_window[1].rescale('s') print 'trace.time[-1]', trace.get_max_time().rescale('s') print raise ValueError('Windowing outside of trace (max)') time_indices1 = numpy.nonzero(trace.time_pts > time_window[0]) time_trace_new = trace.time_pts[time_indices1] trace_new = trace.data_pts[time_indices1] time_indices2 = numpy.nonzero(time_trace_new < time_window[1]) time_trace_new = time_trace_new[time_indices2] trace_new = trace_new[time_indices2] # Ensure we have at least 2 points: if len(time_trace_new) < 2: #tw0 = time_window[0] #tw1 = time_window[1] # get_values(time_window) # trace_new1 = trace.get_value_at_time(tw0) # trace_new2 = trace.get_value_at_time(tw1) trace_new1 = trace.get_values(time_window[0]) trace_new2 = trace.get_values(time_window[1]) data_unts = trace_new1.units time_unts = time_window[0].units time_trace_new = np.array([time_window[0].rescale(time_unts).magnitude, time_window[1].rescale(time_unts).magnitude,]) * time_unts trace_new = np.array([trace_new1.rescale(data_unts).magnitude, trace_new2.rescale(data_unts).magnitude,]) * data_unts if isinstance(trace, TraceFixedDT): return TraceFixedDT(time_trace_new, trace_new, tags=trace.tags) elif isinstance(trace, TraceVariableDT): return TraceVariableDT(time_trace_new, trace_new, tags=trace.tags) else: assert False
TraceMethodCtrl.register(TraceFixedDT, 'window', _window_fixed_trace) TraceMethodCtrl.register(TraceVariableDT, 'window', _window_fixed_trace) # WindowAndShift: ################# TraceMethodCtrl.register(TraceFixedDT, 'windowshift', lambda tr, window: tr.window(window).shift(-1.0*window[0])) TraceMethodCtrl.register(TraceVariableDT, 'windowshift', lambda tr, window: tr.window(window).shift(-1.0*window[0]))