Source code for morphforge.traces.methods.trace_methods_std_integrate
#!/usr/bin/python
# -*- coding: utf-8 -*-
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# Copyright (c) 2012 Michael Hull.
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from morphforge.traces.traceobjpluginctrl import TraceMethodCtrl
from morphforge.traces import TraceFixedDT
from morphforge.traces.tracetypes import TracePiecewise, PieceWiseComponentVisitor
[docs]def _integrate_pointbased(tr, ):
import scipy.integrate
return scipy.integrate.simps(y=tr.data_pts_np, x=tr.time_pts_np) * tr.data_unit * tr.time_unit
TraceMethodCtrl.register(TraceFixedDT, 'integrate', _integrate_pointbased)
[docs]class PiecewiseIntegrator(PieceWiseComponentVisitor):
@classmethod
[docs] def visit_linear(cls, o):
return 0.5 * (o.time_window[1]-o.time_window[0]) * (o.x1-o.x0)
@classmethod
[docs] def visit_flat(cls, o ):
return (o.time_window[1]-o.time_window[0]) * o.x
[docs]def _integrate_piecewise(tr):
pieces = [PiecewiseIntegrator.visit(piece) for piece in tr.pieces]
tot = None
for piece in pieces:
if tot is None:
tot = piece
else:
tot = tot+piece
return tot
TraceMethodCtrl.register(TracePiecewise, 'integrate', _integrate_piecewise )