#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# - Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# - Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in
# the documentation and/or other materials provided with the
# distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# ----------------------------------------------------------------------
[docs]class MHOCSections(object):
InitHeader = 'InitHeader'
InitTemplates = 'InitTemplates'
InitCells = 'InitCells'
InitCellMembranes = 'InitCellMembranes'
InitVoltageClamps = 'InitVoltageClamps'
InitCurrentClamps = 'InitCurrentClamps'
InitSynapsesChemPost = 'InitSynapsesChemPost'
InitSynapsesChemPre = 'InitSynapsesChemPre'
InitGapJunction = 'InitGapJunctions'
InitRecords = 'InitRecords'
InitSimParams = 'InitSimParams'
run = 'run'
ordered = [
InitHeader,
InitTemplates,
InitCells,
InitCellMembranes,
InitVoltageClamps,
InitCurrentClamps,
InitSynapsesChemPost,
InitSynapsesChemPre,
InitGapJunction,
InitRecords,
InitSimParams,
run,
]
[docs]class MHocFileData(object):
Cells = 'Cells'
Recordables = 'Recordables'
CurrentClamps = 'CurrentClamps'
VoltageClamps = 'VoltageClamps'
Synapses = 'Synapses'
GapJunctions = 'GapJunctions'
root_infos = [
Cells,
Recordables,
CurrentClamps,
VoltageClamps,
Synapses,
GapJunctions,
]
[docs]class MHocFile(object):
[docs] def __setitem__(self, key, value):
self.info[key] = value
[docs] def __getitem__(self, key):
if not key in self.info:
return None
return self.info[key]
[docs] def __init__(self):
_info = [(inf, {}) for inf in MHocFileData.root_infos]
self.info = dict(_info)
self.sections = dict([(section, []) for section in MHOCSections.ordered])
[docs] def add_to_section(self, section_name, text):
self.sections[section_name].append(text)
[docs] def __str__(self):
def str_sect(sect):
heading = '// Section: %s ' % sect
header_underline = '/' * len(heading)
section_text = '\n'.join(self.sections[sect])
return '\n'.join([heading, header_underline, section_text, '\n', '\n'])
return '\n'.join(str_sect(s) for s in MHOCSections.ordered)