Source code for morphforge.simulation.neuron.core.neuronsimulationsettings

#!/usr/bin/python
# -*- coding: utf-8 -*-

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from morphforge.units import qty


[docs]class NEURONSimulationSettings(object): dt = 'dt' tstop = 'tstop' cvode = 'cvode' reltol = 'reltol' abstol = 'abstol' strict_modlunit='strict_modlunit' allparams = (dt, tstop, cvode, reltol, abstol, strict_modlunit) @classmethod
[docs] def get_defaults(cls): defs = {NEURONSimulationSettings.dt: qty('0.01:ms'), NEURONSimulationSettings.tstop: qty('500:ms'), NEURONSimulationSettings.reltol: 0.0, NEURONSimulationSettings.abstol: 1e-2, #NEURONSimulationSettings.reltol: 1e-12, #NEURONSimulationSettings.abstol: 1e-12, NEURONSimulationSettings.cvode: True, NEURONSimulationSettings.strict_modlunit: True } # Check we have defaults for all parameters: for parameter in NEURONSimulationSettings.allparams: assert parameter in defs return defs
[docs] def __init__(self, **kwargs): self.params = NEURONSimulationSettings.get_defaults() for key in kwargs: assert key in self.params self.params[key] = kwargs[key]
[docs] def __getitem__(self, key): return self.params[key]