Source code for morphforge.simulation.neuron.core.neuronsimulationsettings
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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from morphforge.units import qty
[docs]class NEURONSimulationSettings(object):
dt = 'dt'
tstop = 'tstop'
cvode = 'cvode'
reltol = 'reltol'
abstol = 'abstol'
strict_modlunit='strict_modlunit'
allparams = (dt, tstop, cvode, reltol, abstol, strict_modlunit)
@classmethod
[docs] def get_defaults(cls):
defs = {NEURONSimulationSettings.dt: qty('0.01:ms'),
NEURONSimulationSettings.tstop: qty('500:ms'),
NEURONSimulationSettings.reltol: 0.0,
NEURONSimulationSettings.abstol: 1e-2,
#NEURONSimulationSettings.reltol: 1e-12,
#NEURONSimulationSettings.abstol: 1e-12,
NEURONSimulationSettings.cvode: True,
NEURONSimulationSettings.strict_modlunit: True
}
# Check we have defaults for all parameters:
for parameter in NEURONSimulationSettings.allparams:
assert parameter in defs
return defs
[docs] def __init__(self, **kwargs):
self.params = NEURONSimulationSettings.get_defaults()
for key in kwargs:
assert key in self.params
self.params[key] = kwargs[key]
[docs] def __getitem__(self, key):
return self.params[key]