Source code for morphforge.simulation.neuron.core.neuronsimulationenvironment
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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# modification, are permitted provided that the following conditions
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# - Redistributions of source code must retain the above copyright
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# - Redistributions in binary form must reproduce the above copyright
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from morphforge.core import PluginDict
from morphforge.simulation.base import SimulationEnvironment
from morphforge.simulation.base import CurrentClampStepChange
from morphforge.simulation.base import VoltageClampStepChange
from morphforge.simulation.neuron.core import NEURONSimulationSettings
from morphforge.simulation.neuron.networks import NEURONGapJunction
from morphforge.simulation.neuron.core import NEURONCell
from morphforge.simulation.neuron.core import NEURONSimulation
[docs]class NEURONEnvironment(SimulationEnvironment):
_env_name = "NEURON"
[docs] def Simulation(self, **kwargs):
return NEURONSimulation(environment=self, **kwargs)
[docs] def Cell(self, **kwargs):
return NEURONCell(**kwargs)
[docs] def SimulationSettings(self, **kwargs):
return NEURONSimulationSettings(**kwargs)
channels = PluginDict()
presynapticmechanisms = PluginDict()
synapse_psm_template_type = PluginDict()
currentclamps = PluginDict()
voltageclamps = PluginDict()
@classmethod
[docs] def Channel(cls, chltype, **kwargs):
chl = cls.channels.get_plugin(chltype)
return chl(**kwargs)
@classmethod
[docs] def SynapticTrigger(cls, triggertype, **kwargs):
trigger_functor = cls.presynapticmechanisms.get_plugin(triggertype)
return trigger_functor(**kwargs)
[docs] def PostSynapticMechTemplate(self, psm_type, **kwargs):
tmpl_functor = self.synapse_psm_template_type.get_plugin(psm_type)
return tmpl_functor(**kwargs)
[docs] def CurrentClamp(self, form=CurrentClampStepChange, **kwargs):
current_clamp = self.currentclamps.get_plugin(form)
return current_clamp(**kwargs)
[docs] def VoltageClamp(self, form=VoltageClampStepChange, **kwargs):
voltage_clamp = self.voltageclamps.get_plugin(form)
return voltage_clamp(**kwargs)
[docs] def GapJunction(self, **kwargs):
return NEURONGapJunction(**kwargs)
[docs] def Synapse(self, **kwargs):
from morphforge.simulation.neuron.networks import NEURONSynapse
return NEURONSynapse(**kwargs)