Source code for morphforge.simulation.neuron.biophysics.mm_neuron

#!/usr/bin/python
# -*- coding: utf-8 -*-

# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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import cPickle as pickle
from morphforge.core.misc import StrUtils


[docs]class NEURONChl_Base(object):
[docs] def __init__(self, **kwargs): super(NEURONChl_Base, self).__init__(**kwargs) self.mm_neuronNumber = None self.cachedNeuronSuffix = None
[docs] def get_neuron_suffix(self): # Cache the result: (We shouldn't have to do this, but there is a bug # with EqnSetChlNeuron::getModFileChangeble(), which is not returning the same thing # on each call for some reason. if self.cachedNeuronSuffix is None: # We take the hash off the parameters that will change the mod-file. # This means we don't duplicate millions of mod-files mod_file_changeables = self.get_mod_file_changeables() mod_file_changeables[None] = str(type(mod_file_changeables).__str__), str(self.__class__.__name__) md5 = StrUtils.get_hash_md5(pickle.dumps(sorted(tuple(mod_file_changeables.iteritems())))) self.cachedNeuronSuffix = 'MIKETMP%sChl' % md5 return self.cachedNeuronSuffix
[docs] def get_mod_file_changeables(self): raise NotImplementedError()