Source code for morphforge.simulation.neuron.biophysics.mm_neuron
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# - Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# - Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in
# the documentation and/or other materials provided with the
# distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# ----------------------------------------------------------------------
import cPickle as pickle
from morphforge.core.misc import StrUtils
[docs]class NEURONChl_Base(object):
[docs] def __init__(self, **kwargs):
super(NEURONChl_Base, self).__init__(**kwargs)
self.mm_neuronNumber = None
self.cachedNeuronSuffix = None
[docs] def get_neuron_suffix(self):
# Cache the result: (We shouldn't have to do this, but there is a bug
# with EqnSetChlNeuron::getModFileChangeble(), which is not returning the same thing
# on each call for some reason.
if self.cachedNeuronSuffix is None:
# We take the hash off the parameters that will change the mod-file.
# This means we don't duplicate millions of mod-files
mod_file_changeables = self.get_mod_file_changeables()
mod_file_changeables[None] = str(type(mod_file_changeables).__str__), str(self.__class__.__name__)
md5 = StrUtils.get_hash_md5(pickle.dumps(sorted(tuple(mod_file_changeables.iteritems()))))
self.cachedNeuronSuffix = 'MIKETMP%sChl' % md5
return self.cachedNeuronSuffix
[docs] def get_mod_file_changeables(self):
raise NotImplementedError()