Source code for morphforge.simulation.base.networks
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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# modification, are permitted provided that the following conditions
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# - Redistributions of source code must retain the above copyright
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# - Redistributions in binary form must reproduce the above copyright
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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[docs]class Synapse(object):
[docs] class Recordables(object):
SynapticCurrent = 'SynapticCurrent'
SynapticConductance = 'SynapticConductance'
[docs] def __init__(self, trigger, postsynaptic_mech):
self._trigger = trigger
self._post_synaptic_mechanism = postsynaptic_mech
#self._post_synaptic_mechanism.synapse = self
self._post_synaptic_mechanism.synapses.append(self)
self._trigger.synapses.append(self)
self.population = None
[docs] def get_trigger(self):
return self._trigger
[docs] def get_postsynaptic_mechanism(self):
return self._post_synaptic_mechanism
[docs] def get_presynaptic_cell(self):
return self._trigger.get_presynaptic_cell()
[docs] def get_postsynaptic_cell(self):
return self._post_synaptic_mechanism.get_postsynaptic_cell()
[docs]class GapJunction(object):
[docs] def __init__(self, celllocation1, celllocation2, resistance, **kwargs):
super(GapJunction, self).__init__(**kwargs)
self.celllocation1 = celllocation1
self.celllocation2 = celllocation2
self.resistance = resistance
@property
def connected_cells(self):
return [self.celllocation1.cell, self.celllocation2.cell]
[docs]class PreSynapticTypes(object):
Cell = 'Cell'
FixedTiming = 'Timing'
[docs]class SynapticTrigger(object):
[docs] def __init__(self):
self.synapses = []
pass
@property
def synapse(self):
assert False, 'Deprecated, should use something synapses...'
[docs] def get_presynaptic_cell(self):
raise NotImplementedError()
[docs] def get_type(self):
raise NotImplementedError()
[docs]class PostSynapticMech(object):
[docs] def __init__(self, cell_location, **kwargs):
super(PostSynapticMech, self).__init__(**kwargs)
self.cell_location = cell_location
#self.synapse = None
self.synapses = []
@property
def synapse(self):
assert False, 'Deprecated, should use synapses'
[docs] def get_postsynaptic_cell(self):
return self.cell_location.cell
@classmethod
[docs] def get_variables(cls):
raise NotImplementedError()
[docs]class PostSynapticMechTemplate(object):
[docs] def __init__(self, template_name=None, **kwargs):
super(PostSynapticMechTemplate, self).__init__(**kwargs)
self.template_name = template_name
[docs] def instantiate(self, **kwargs):
raise NotImplementedError()
[docs] def get_variables(self):
raise NotImplementedError()
[docs]class PostSynapticMechInstantiation(PostSynapticMech):
pass