Source code for morphforge.simulation.base.core.celllocation
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
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# modification, are permitted provided that the following conditions
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from morphforge.morphology.core import MorphLocation
[docs]class CellLocation(object):
[docs] def __init__(self, cell, morphlocation=None, section=None, sectionpos=None):
self._cell = cell
if morphlocation:
assert not section and not sectionpos
self.morphlocation = morphlocation
else:
assert not morphlocation
self.morphlocation = MorphLocation(section=section,
sectionpos=sectionpos)
assert not self.morphlocation.section.is_dummy_section()
[docs] def get_cell(self):
return self._cell
cell = property(get_cell, None, None)
# We want to be able to treat CellLocations as locations,
# so that we can measure between them for example:
@property
def section(self):
return self.morphlocation.section
@property
def sectionpos(self):
return self.morphlocation.sectionpos
[docs] def get_3d_position(self):
return self.morphlocation.get_3d_position()
[docs] def get_location_description_str(self):
desc = self.cell.name
t = ''
if self.morphlocation.section.idtag:
t = '@' + self.morphlocation.section.idtag
return desc + t