biophysics Package

`biophysics` Package

class ModFile(modtxt, name=None, additional_compile_flags='', additional_link_flags='', additional_ld_library_path='', strict_modlunit=True)[source]

Bases: object

__init__(modtxt, name=None, additional_compile_flags='', additional_link_flags='', additional_ld_library_path='', strict_modlunit=True)[source]

ensure_built()[source]

classmethod extract_nrn_suffix_from_text(txt)[source]

get_built_filename_full(ensure_built=True)[source]

get_built_filename_short(ensure_built=True)[source]

get_md5_hash()[source]

class ModFileCompiler[source]

Bases: object

classmethod build_modfile(modfile, strict_modlunit)[source]

classmethod check_modfile_units(modfilename)[source]

class NEURONChl_Base(**kwargs)[source]

Bases: object

__init__(**kwargs)[source]

get_mod_file_changeables()[source]

get_neuron_suffix()[source]

`mm_neuron` Module

class NEURONChl_Base(**kwargs)[source]

Bases: object

__init__(**kwargs)[source]

get_mod_file_changeables()[source]

get_neuron_suffix()[source]

`modfile` Module

class ModFile(modtxt, name=None, additional_compile_flags='', additional_link_flags='', additional_ld_library_path='', strict_modlunit=True)[source]

Bases: object

__init__(modtxt, name=None, additional_compile_flags='', additional_link_flags='', additional_ld_library_path='', strict_modlunit=True)[source]

ensure_built()[source]

classmethod extract_nrn_suffix_from_text(txt)[source]

get_built_filename_full(ensure_built=True)[source]

get_built_filename_short(ensure_built=True)[source]

get_md5_hash()[source]

`modfilecompiler` Module

class ModBuilderParams[source]

Bases: object

compile_defs = ['HAVE_CONFIG_H']

compile_includes = ['.', '..', '']

classmethod get_compile_str(c_filename, lo_filename, additional_compile_flags='')[source]

classmethod get_link_str(lo_filename, la_filename, additional_link_flags='')[source]

libtoolpath = ''

modlunitpath = ''

nocmodlpath = ''

nrn_link_dirs = ['']

rnd_alone_link_statement = ''

rpath = ''

std_link_libs = ['nrnoc', 'oc', 'memacs', 'nrnmpi', 'scopmath', 'sparse13', 'readline', 'ncurses', 'ivoc', 'neuron_gnu', 'meschach', 'sundials', 'm', 'dl']

class ModFileCompiler[source]

Bases: object

classmethod build_modfile(modfile, strict_modlunit)[source]

classmethod check_modfile_units(modfilename)[source]

_build_mod_file(modfilename, output_dir=None, build_dir=None, modfile=None)[source]

_build_modfile_local(mod_filename_short, modfile=None)[source]

_simple_exec(cmd, remaining, err_ok=False)[source]

biophysics Package