Source code for morphforge.simulation.neuron.simulationdatacontainers.mhocfile

#!/usr/bin/python
# -*- coding: utf-8 -*-

# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
#  - Redistributions of source code must retain the above copyright
#    notice, this list of conditions and the following disclaimer.
#  - Redistributions in binary form must reproduce the above copyright
#    notice, this list of conditions and the following disclaimer in
#    the documentation and/or other materials provided with the
#    distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
#  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# ----------------------------------------------------------------------


[docs]class MHOCSections(object): InitHeader = 'InitHeader' InitTemplates = 'InitTemplates' InitCells = 'InitCells' InitCellMembranes = 'InitCellMembranes' InitVoltageClamps = 'InitVoltageClamps' InitCurrentClamps = 'InitCurrentClamps' InitSynapsesChemPost = 'InitSynapsesChemPost' InitSynapsesChemPre = 'InitSynapsesChemPre' InitGapJunction = 'InitGapJunctions' InitRecords = 'InitRecords' InitSimParams = 'InitSimParams' run = 'run' ordered = [ InitHeader, InitTemplates, InitCells, InitCellMembranes, InitVoltageClamps, InitCurrentClamps, InitSynapsesChemPost, InitSynapsesChemPre, InitGapJunction, InitRecords, InitSimParams, run, ]
[docs]class MHocFileData(object): Cells = 'Cells' Recordables = 'Recordables' CurrentClamps = 'CurrentClamps' VoltageClamps = 'VoltageClamps' Synapses = 'Synapses' GapJunctions = 'GapJunctions' root_infos = [ Cells, Recordables, CurrentClamps, VoltageClamps, Synapses, GapJunctions, ]
[docs]class MHocFile(object):
[docs] def __setitem__(self, key, value): self.info[key] = value
[docs] def __getitem__(self, key): if not key in self.info: return None return self.info[key]
[docs] def __init__(self): _info = [(inf, {}) for inf in MHocFileData.root_infos] self.info = dict(_info) self.sections = dict([(section, []) for section in MHOCSections.ordered])
[docs] def add_to_section(self, section_name, text): self.sections[section_name].append(text)
[docs] def __str__(self): def str_sect(sect): heading = '// Section: %s ' % sect header_underline = '/' * len(heading) section_text = '\n'.join(self.sections[sect]) return '\n'.join([heading, header_underline, section_text, '\n', '\n']) return '\n'.join(str_sect(s) for s in MHOCSections.ordered)