Source code for morphforge.simulation.neuron.objects.obj_vclamp

#!/usr/bin/python
# -*- coding: utf-8 -*-

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# Copyright (c) 2012 Michael Hull.
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from morphforge import units
from morphforge.simulation.neuron.objects.neuronobject import NEURONObject
from morphforge.simulation.base import VoltageClamp
from morphforge.simulation.base import VoltageClampStepChange
from morphforge.simulation.neuron.simulationdatacontainers import MHocFileData
#from morphforge.units import qty
from morphforge.simulation.neuron.hocmodbuilders.hocmodutils import HocModUtils
from morphforge.simulation.neuron.hocmodbuilders import HocBuilder
from morphforge.simulation.neuron.objects.neuronrecordable import NEURONRecordable
from morphforge.constants.standardtags import StandardTags
from morphforge.simulation.neuron.core.neuronsimulationenvironment import NEURONEnvironment


[docs]class VoltageClampCurrentRecord(NEURONRecordable):
[docs] def __init__(self, vclamp, **kwargs): super(VoltageClampCurrentRecord, self).__init__(**kwargs) self.vclamp = vclamp
[docs] def get_unit(self): return units.nA
[docs] def get_std_tags(self): return [StandardTags.Current]
[docs] def build_hoc(self, hocfile_obj): obj_name_hoc = hocfile_obj[MHocFileData.VoltageClamps][self.vclamp]['stimname'] HocModUtils.create_record_from_object(hocfile_obj=hocfile_obj, vecname='RecVec%s' % self.name, objname=obj_name_hoc, objvar='i', recordobj=self)
[docs] def build_mod(self, modfile_set): pass
[docs]class NEURONVoltageClampStepChange(VoltageClampStepChange, NEURONObject):
[docs] def __init__(self, **kwargs): super(NEURONVoltageClampStepChange, self).__init__(**kwargs)
[docs] def build_hoc(self, hocfile_obj): HocBuilder.VoltageClamp(hocfile_obj=hocfile_obj, voltageclamp=self)
[docs] def build_mod(self, modfile_set): pass
[docs] def get_recordable(self, what, name, **kwargs): recorders = { VoltageClamp.Recordables.Current: VoltageClampCurrentRecord } return recorders[what](vclamp=self, name=name, **kwargs)
NEURONEnvironment.voltageclamps.register_plugin(VoltageClampStepChange, NEURONVoltageClampStepChange)