Source code for morphforge.simulation.base.biophysics.channeltargetters

#!/usr/bin/python
# -*- coding: utf-8 -*-

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# Copyright (c) 2012 Michael Hull.
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from morphforge.morphology.core import Region

[docs]class Targeter(object):
[docs] def __init__(self, priority, **kwargs): super(Targeter,self).__init__(**kwargs) self.priority = priority
[docs] def get_priority(self): return self.priority #raise NotImplementedError()
[docs] def does_target_section(self, section): raise NotImplementedError()
[docs] def get_description(self): raise NotImplementedError()
[docs]class PassiveTargetterEverywhereDefault(Targeter):
[docs] def __init__(self, priority=0, **kwargs): super(PassiveTargetterEverywhereDefault, self).__init__(priority=priority,**kwargs)
[docs] def does_target_section(self, section): return True
[docs] def get_description(self): return 'Default'
[docs]class PassiveTargetterEverywhere(Targeter):
[docs] def __init__(self, priority=5, **kwargs): super(PassiveTargetterEverywhere, self).__init__(priority=priority, **kwargs)
[docs] def does_target_section(self, section): return True
[docs] def get_description(self): return 'Everywhere'
[docs]class PassiveTargetterRegion(Targeter):
[docs] def __init__(self, region, priority=10, **kwargs): super(PassiveTargetterRegion, self).__init__(priority=priority, **kwargs) self.region = region
[docs] def does_target_section(self, section): return section.region == self.region
[docs] def get_description(self): return 'Passive-Region:%s' % self.region.name
[docs]class ChannelTargeterEverywhere(Targeter):
[docs] def __init__(self, priority=10, **kwargs): super(ChannelTargeterEverywhere,self).__init__(priority=priority, **kwargs)
[docs] def does_target_section(self, section): return True
[docs] def get_description(self): return 'Everywhere'
[docs]class ChannelTargeterRegion(Targeter):
[docs] def __init__(self, region, priority=20, **kwargs): super(ChannelTargeterRegion, self).__init__(priority=priority, **kwargs) assert isinstance(region, Region) self.region = region
[docs] def does_target_section(self, section): return section.region == self.region
[docs] def get_description(self): region_name = self.region.name return 'Region: %s' % region_name
[docs]class ChannelTargeterSectionPath(Targeter):
[docs] def does_target_section(self, section): assert False
[docs] def get_description(self): return 'MM-SectionPath: ??'
[docs]class ChannelTargeterSection(Targeter):
[docs] def __init__(self, section, priority=40, **kwargs): super(ChannelTargeterSection, self).__init__(priority=priority, **kwargs) self.section = section
[docs] def does_target_section(self, section): return self.section == section
[docs] def get_description(self): if self.section.idtag: section_desc = self.section.idtag else: section_desc = '[No idtag]' return 'Section: %s' % section_desc