Source code for morphforge.simulation.base.biophysics.channelapplicators

#!/usr/bin/python
# -*- coding: utf-8 -*-

# ---------------------------------------------------------------------
# Copyright (c) 2012 Michael Hull.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
#  - Redistributions of source code must retain the above copyright
#    notice, this list of conditions and the following disclaimer.
#  - Redistributions in binary form must reproduce the above copyright
#    notice, this list of conditions and the following disclaimer in
#    the documentation and/or other materials provided with the
#    distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
#  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# ----------------------------------------------------------------------


[docs]class ChannelApplicator(object):
[docs] def __init__(self,): super(ChannelApplicator, self).__init__() self.target_channel = None
[docs] def set_target_channel(self, target_channel): assert self.target_channel is None self.target_channel = target_channel # Check that everything that is over-ridden actually exists: for varname in self.get_variables_overriden(): assert varname in self.target_channel.get_variables(), 'unexpected setting of %s' % varname
[docs] def get_variable_value_for_section(self, variablename, section): raise NotImplementedError()
[docs] def get_description(self): raise NotImplementedError()
[docs] def get_variables_overriden(self): raise NotImplementedError()
[docs]class ChannelApplicatorUniform(ChannelApplicator):
[docs] def __init__(self, parameter_multipliers=None, parameter_overrides=None): super(ChannelApplicatorUniform, self).__init__() self._parameter_multipliers = parameter_multipliers or {} self._parameter_overrides = parameter_overrides or {} # Check no parameters are specified twice: duplicate_defs = set(self._parameter_multipliers.keys()) & set(self._parameter_overrides.keys()) assert len(duplicate_defs) == 0, 'Ambiguity: Parameter specified twice: %s' % duplicate_defs
[docs] def get_variables_overriden(self): return set(self._parameter_multipliers.keys()) | set(self._parameter_overrides.keys())
[docs] def get_variable_value_for_section(self, variable_name, section): assert not ( variable_name in self._parameter_multipliers and variable_name in self._parameter_overrides) if variable_name in self._parameter_multipliers: return self._parameter_multipliers[variable_name] * self.target_channel.get_default(variable_name) if variable_name in self._parameter_overrides: return self._parameter_overrides[variable_name] return self.target_channel.get_default(variable_name)
[docs] def get_description(self): s1 = 'Uniform Applicator: ' s2 = ('Overrides:{%s} ' % (','.join( [ "%s=%s" % (key,value) for (key,value) in self._parameter_overrides.iteritems()] )) ) if self._parameter_overrides else '' s3 = ('Multipliers:{%s} ' % (','.join( [ "%s=%s" % (key,value) for (key,value) in self._parameter_multipliers.iteritems()] )) ) if self._parameter_multipliers else '' return (s1 + s2 + s3).strip()