Source code for morphforge.morphology.conversion.region_to_int_bimap
#!/usr/bin/python
# -*- coding: utf-8 -*-
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# Copyright (c) 2012 Michael Hull.
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[docs]class RegionToIntMapBiMap(object):
[docs] def __init__(self):
self.regionname2int = {}
self.int2regionname = {}
[docs] def add_mapping(self, regionname, _int):
assert not regionname in self.regionname2int
assert not _int in self.int2regionname
self.regionname2int[regionname] = _int
self.int2regionname[_int] = regionname
[docs] def int_to_region_name(self, _int):
return self.int2regionname[_int]
[docs] def region_name_to_int(self, regionname):
return self.regionname2int[regionname]
[docs]class AutoRegionToIntMapTable(RegionToIntMapBiMap):
[docs] def __init__(self):
RegionToIntMapBiMap.__init__(self)
# Add the standard SWC conversions:
self.add_mapping(regionname=None, _int=0)
from morphforge.morphology import conventions
for (name, number) in conventions.SWCRegionCodes.name2number.iteritems():
self.add_mapping(name, number)
[docs] def int_to_region_name(self, _int):
if not _int in self.int2regionname:
self.add_mapping(regionname='AutoRegion%d' % _int, _int=_int)
return RegionToIntMapBiMap.int_to_region_name(self, _int)
[docs] def region_name_to_int(self, regionname):
if not regionname in self.regionname2int:
self.add_mapping(regionname=regionname,
_int=len(self.int2regionname))
return RegionToIntMapBiMap.region_name_to_int(self, regionname)